Library

Status: Published

Year: 2023

A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks

Authors: José Pinto, Mykaella Mestre, J. Ramos, Rafael S.Costa, Gerald Striedner, Rui Oliveira

Status: Published

Year: 2022

Journal: Computers & Chemical Engineering

Volume/Issue: 165

URL/DOI: https://doi.org/10.1016/j.compchemeng.2022.107952

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The Impact of the Antibiotic Fosfomycin on Wastewater Communities Measured by Flow Cytometry

Authors: Shuang Li, Zishu Liu, Christine Süring, Luyao Chen, Susann Müller, Ping Zeng

Status: Published

Year: 2022

Journal: Sec. Systems Microbiology

Publisher: Frontiers in Microbiology

URL/DOI: https://doi.org/10.3389/fmicb.2021.737831

Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2

Authors: Carmen Bruckmann, Susann Müller, Christian Höner zu Siederdissen

Status: Published

Year: 2022

Journal: Computational and Structural Biotechnology Journal

Volume/Issue: 20

Pages: 6473-6489

URL/DOI: https://doi.org/10.1016/j.csbj.2022.11.033

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Toward merging bottom-up and top-down model-based designing of synthetic microbial communities

Authors: David San Leon, Juan Nogales

Status: Published

Year: 2022

Journal: Current Opinion in Microbiology

Volume/Issue: 69

Publisher: Elsevier

URL/DOI: https://doi.org/10.1016/j.mib.2022.102169

Collection, pre-screening and characterization of natural microbiomes

Authors: Cristiana Torres, Marta Catalao, Filomena Freitas, Maria A. M. Reis, Eva Gonzales-Flo, Beatriz Altamira-Algarra, Marta Bellver-Catala, Joan Garcia

Status: Published

Year: 2022

Deliverable number: 2.1

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Monitoring PHB production in Synechocystis sp. with hyperspectral images

Authors: Francisco Rodríguez Lorenzo, Miguel Placer Lorenzo, Luz Herrero Castilla, Sandra Iglesias, Santiago Gómez, Juan Manuel Fernández Montenegro, Estel Rueda, Rubén Diez-Montero, Joan Garcia, Eva Gonzalez-Flo, Juan Antonio Álvarez Rodríguez

Status: Published

Year: 2022

Journal: Water Science & Tchnology

Volume/Issue: Volume 86, Issue 1

Publisher: Water Sci Technol

URL/DOI: https://doi.org/10.2166/wst.2022.194

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A set of optimized P. taiwanensis VLB 120 balancer strains with enhanced c-di-GMP levels

Authors: Prof. Dr. Katja Bühler

Status: Published

Year: 2022

Deliverable number: 3.1

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NMR-environomics dataset

Authors: Cristiana A.V. Torres, Marta Catalão, Filomena Freitas, Maria A.M. Reis Rafael Costa, Rui Oliveira

Status: Published

Year: 2022

Deliverable number: 1.9

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Current advances in engineering cyanobacteria and their applications for photosynthetic butanol production

Authors: Xufeng Liu, Hao Xie, Stamatina Roussou, Peter Lindblad

Status: Published

Year: 2022

Journal: Current Opinion in Biotechnology

Volume/Issue: 73

Publisher: Elsevier

URL/DOI: https://doi.org/10.1016/j.copbio.2021.07.014

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When microbial biotechnology meets material engineering

Authors: Ana M. Hernández-Arriaga, Cristina Campano, Virginia Rivero-Buceta, M. Auxiliadora Prieto

Status: Published

Year: 2021

Journal: Microbial Biotechnology

Volume/Issue: 15/1

Publisher: John Wiley & Sons, Ltd

Pages: 149 - 163

URL/DOI: https://doi.org/10.1111/1751-7915.13975

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Project branding and communication channels set-up and running (logo, promotional materials, website, templates, social media)

Authors: Teodor Metodiev, Gabriela Popova

Status: Published

Year: 2021

Deliverable number: 6.1

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Anti-staphylococcal hydrogels based on bacterial cellulose and the antimicrobial biopolyester poly (3-hydroxy-acetylthioalkanoate-co-3-hydroxyalkanoate).

Authors: Virginia Rivero-Buceta, María Rosa Aguilar, Ana María Hernández-Arriaga, Francisco G.Blanco, Antonia Rojas, Marta Tortajada, Rosa Ana Ramírez-Jiménez, Blanca Vázquez-Lasa, Auxiliadora Prieto

Status: Published

Year: 2020

Journal: International Journal of Biological Macromolecules

Volume/Issue: 162

Publisher: Elsevier

Pages: 1869-1879

URL/DOI: https://doi.org/10.1016/j.ijbiomac.2020.07.289

High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

Authors: Juan Nogales, Joshua Mueller, Steinn Gudmundsson, Francisco J. Canalejo, Estrella Duque, Jonathan Monk, Adam M. Feist, Juan Luis Ramos, Wei Niu, Bernhard O. Palsson

Status: Published

Year: 2020

Journal: Environmental Microbiology

Volume/Issue: 22

Publisher: Society for Applied Microbiology

Pages: 255-269

URL/DOI: https://doi.org/10.1111/1462-2920.14843

Preparation and characterization of films based on a natural P(3HB)/mcl-PHA blend obtained through the co-culture of Cupriavidus necator and Pseudomonas citronellolis in apple pulp waste

Authors: Ana Teresa Rebocho, João R. Pereira, Luísa A. Neves, Vítor D. Alves, Chantal Sevrin, Christian Grandfils, Filomena Freitas, Maria A. M. Reis

Status: Published

Year: 2020

Journal: Bioengineering

Volume/Issue: 7/2

Publisher: MDPI

Pages: 34

URL/DOI: https://doi.org/10.3390/bioengineering7020034

Current processes and future challenges of photoautotrophic production of acetyl-CoA-derived solar fuels and chemicals in cyanobacteria

Authors: Rui Miao, Hao Xie, Xufeng Liu, Pia Lindberg, Peter Lindblad

Status: Published

Year: 2020

Journal: Current Opinion in Chemical Biology

Volume/Issue: 59

Publisher: Elsevier

Pages: 69-76

URL/DOI: https://doi.org/10.1016/j.cbpa.2020.04.013

In silico prospection of microorganisms to produce polyhydroxyalkanoate from whey: Caulobacter segnis DSM 29236 as a suitable industrial strain

Authors: Daniel Bustamante, Silvia Segarra, Marta Tortajada, Daniel Ramón, Carlos del Cerro, María Auxiliadora Prieto, José Ramón Iglesias, Antonia Rojas

Status: Published

Year: 2019

Journal: Microbial biotechnology

Volume/Issue: 12/3

Publisher: Society for Applied Microbiology

Pages: 487-501

URL/DOI: https://doi.org/10.1111/1751-7915.13371

Chemical Composition and Antioxidant Properties of Essential Oils from Peppermint, Native Spearmint and Scotch Spearmint

Authors: Zhaohai Wu, Bie Tan, Yanhong Liu, James Dunn, Patricia Martorell Guerola, Marta Tortajada, Zhijun Cao, Peng Ji

Status: Published

Year: 2019

Journal: Molecules

Volume/Issue: 24/15

Publisher: MDPI

URL/DOI: https://doi.org/10.3390/molecules24152825

Camelina oil as a promising substrate for mcl-PHA production in Pseudomonas sp. cultures

Authors: Daniel Bustamante, Marta Tortajada, Daniel Ramon, Antonia Rojas

Status: Published

Year: 2019

Journal: Applied food biotechnology

Volume/Issue: 6/1

Publisher: National Nutrition & Food Technology Research Institute

Pages: 61-70

URL/DOI: https://doi.org/10.22037/afb.v6i1.21635

Improved Raoultella planticola Strains for the Production of 2, 3-Butanediol from Glycerol

Authors: Daniel Bustamante, Silvia Segarra, Alejandro Montesinos, Marta Tortajada, Daniel Ramón, Antonia Rojas

Status: Published

Year: 2019

Journal: Fermentation

Volume/Issue: 5(1)/11

Publisher: MDPI

URL/DOI: https://doi.org/10.3390/fermentation5010011

CyanoFactory, a European consortium to develop technologies needed to advance cyanobacteria as chassis for production of chemicals and fuels

Authors: Peter Lindblad, David Fuente, Friederike Borbe, Bernardo Cicchi, Alberto Conejero, Narciso Couto, Helena Čelešnik, Marcello M. Diano, Marko Dolinar, Serena Esposito, Caroline Evans, Eunice A. Ferreira, Joseph Keller, Namita Khanna, Gabriel Kind, Andrew Landels, Lenin Lemus, Josselin Noirel, Sarah Ocklenburg, Paulo Oliveira, Röbbe Wünschiers

Status: Published

Year: 2019

Journal: Algal Research

Volume/Issue: 41

Publisher: Elsevier

URL/DOI: https://doi.org/10.1016/j.algal.2019.101510

Modular Engineering for Photosynthetic 1-Butanol Production in Cyanobacteria

Authors: Xufeng Liu, Rui Miao, Pia Lindberg, Peter Lindblad

Status: Published

Year: 2019

Journal: Energy & Environmental Science

Volume/Issue: 12

Publisher: Royal society of chemistry

Pages: 2765-2777

URL/DOI: 10.1039/C9EE01214A

FLYCOP: metabolic modeling-based analysis and engineering microbial communities

Authors: Beatriz García-Jiménez, José Luis García, Juan Nogales

Status: Published

Year: 2018

Journal: Bioinformatics

Volume/Issue: 34/17

Publisher: OXFORD Academics

Pages: i954-i963

URL/DOI: https://doi.org/10.1093/bioinformatics/bty561

Start-up of a microalgae-based treatment system within the biorefinery concept: from wastewater to bioproducts

Authors: Enrica Uggetti, Joan García, Juan Antonio Álvarez, María Jesús García-Galán

Status: Published

Year: 2018

Journal: Water Science & Technology

Volume/Issue: 78/1

Publisher: IWA Publishing

Pages: 114-124

URL/DOI: https://doi.org/10.2166/wst.2018.195

Generation of a functional, semisynthetic [FeFe]-hydrogenase in a photosynthetic microorganism

Authors: Adam Wegelius, Namita Khanna, Charlène Esmieu, Giovanni Davide Barone, Filipe Pinto, Paula Tamagnini, Gustav Berggren, Peter Lindblad

Status: Published

Year: 2018

Journal: Energy & Environmental Science

Volume/Issue: Issue 11

Publisher: Royal society of chemistry

URL/DOI: https://doi.org/10.1039/C8EE01975D

Engineered cyanobacteria with enhanced growth show increased ethanol production and higher biofuel to biomass ratio

Authors: Feiyan Liang, Elias Englund, Pia Lindberg, Peter Lindblad

Status: Published

Year: 2018

Journal: Metabolic Engineering

Volume/Issue: 46

Publisher: Elsevier

Pages: 51-59

URL/DOI: https://doi.org/10.1016/j.ymben.2018.02.006

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

Authors: Zishu Liu, Nicolas Cichocki, Fabian Bonk, Susanne Gunther, Florian Schattenberg, Hauke Harms, Florian Centler, Susann Muller

Status: Published

Year: 2018

Journal: mSphere

Volume/Issue: 3/1

Publisher: American society for microbiology

URL/DOI: https://doi.org/10.1128/mSphere.00564-17

Laboratory-scale simulation and real- time tracking of a microbial contamination event and subsequent shock-chlorination in drinking water

Authors: Michael D. Besmer, Jürg A. Sigrist, Ruben Props, Benjamin Buysschaert, Guannan Mao, Nico Boon, Frederik Hammes

Status: Published

Year: 2017

Journal: Sec. Aquatic Microbiology

Publisher: Frontiers in Microbiology

URL/DOI: https://doi.org/10.3389/fmicb.2017.01900

Constructed wetlands and solar-driven disinfection technologies for sustainable wastewater treatment and reclamation in rural India: SWINGS project

Authors: J. A. Álvarez, C. Ávila, P. Otter, R. Kilian, D. Istenič, M. Rolletschek, P. Molle, N. Khalil, I. Ameršek, V. K. Mishra, C. Jorgensen, A. Garfi, P. Carvalho, H. Brix, C. A. Arias

Status: Published

Year: 2017

Journal: Water Science & Technology

Volume/Issue: 76/6

Publisher: IWA Publishing

URL/DOI: https://doi.org/10.2166/wst.2017.329

The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems

Authors: Michael D. Besmer, David G. Weissbrodt, Bradley E. Kratochvil, Jürg A. Sigrist, Mathias S. Weyland, Frederik Hammes

Status: Published

Year: 2014

Journal: Sec. Systems Microbiology

Publisher: Frontiers in Microbiology

URL/DOI: https://doi.org/10.3389/fmicb.2014.00265

Cell functional enviromics: unravelling the function of environmental factors

Authors: Ana P Teixeira, João ML Dias, Nuno Carinhas, Marcos Sousa, João J Clemente, António E Cunha, Moritz von Stosch, Paula M Alves, Manuel JT Carrondo, Rui Oliveira

Status: Published

Year: 2011

Journal: BMS Systems Biology

Volume/Issue: 5/92

Publisher: Springer

URL/DOI: https://doi.org/10.1186/1752-0509-5-92

Second generation biofuels and local bio-energy systems

Authors: Blanca Antizar-Ladislao, Juan L. Turrion-Gomez

Status: Published

Year: 2008

Journal: Biofuels, Bioproducts & Biorefining

Publisher: Wiley

URL/DOI: https://doi.org/10.1002/bbb.97