Library


Status: Published
Year: 2023

A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks

Authors: José Pinto, Mykaella Mestre, J. Ramos, Rafael S.Costa, Gerald Striedner, Rui Oliveira

Status: Published
Year: 2022
Journal: Computers & Chemical Engineering
Volume/Issue: 165

The Impact of the Antibiotic Fosfomycin on Wastewater Communities Measured by Flow Cytometry

Authors: Shuang Li, Zishu Liu, Christine Süring, Luyao Chen, Susann Müller, Ping Zeng

Status: Published
Year: 2022
Journal: Sec. Systems Microbiology
Publisher: Frontiers in Microbiology

Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2

Authors: Carmen Bruckmann, Susann Müller, Christian Höner zu Siederdissen

Status: Published
Year: 2022
Journal: Computational and Structural Biotechnology Journal
Volume/Issue: 20
Pages: 6473-6489

Toward merging bottom-up and top-down model-based designing of synthetic microbial communities

Authors: David San Leon, Juan Nogales

Status: Published
Year: 2022
Journal: Current Opinion in Microbiology
Volume/Issue: 69
Publisher: Elsevier

Collection, pre-screening and characterization of natural microbiomes

Authors: Cristiana Torres, Marta Catalao, Filomena Freitas, Maria A. M. Reis, Eva Gonzales-Flo, Beatriz Altamira-Algarra, Marta Bellver-Catala, Joan Garcia

Status: Published
Year: 2022
Deliverable number: 2.1

Monitoring PHB production in Synechocystis sp. with hyperspectral images

Authors: Francisco Rodríguez Lorenzo, Miguel Placer Lorenzo, Luz Herrero Castilla, Sandra Iglesias, Santiago Gómez, Juan Manuel Fernández Montenegro, Estel Rueda, Rubén Diez-Montero, Joan Garcia, Eva Gonzalez-Flo, Juan Antonio Álvarez Rodríguez

Status: Published
Year: 2022
Journal: Water Science & Tchnology
Volume/Issue: Volume 86, Issue 1
Publisher: Water Sci Technol

A set of optimized P. taiwanensis VLB 120 balancer strains with enhanced c-di-GMP levels

Authors: Prof. Dr. Katja Bühler

Status: Published
Year: 2022
Deliverable number: 3.1

NMR-environomics dataset

Authors: Cristiana A.V. Torres, Marta Catalão, Filomena Freitas, Maria A.M. Reis Rafael Costa, Rui Oliveira

Status: Published
Year: 2022
Deliverable number: 1.9

Current advances in engineering cyanobacteria and their applications for photosynthetic butanol production

Authors: Xufeng Liu, Hao Xie, Stamatina Roussou, Peter Lindblad

Status: Published
Year: 2022
Journal: Current Opinion in Biotechnology
Volume/Issue: 73
Publisher: Elsevier

When microbial biotechnology meets material engineering

Authors: Ana M. Hernández-Arriaga, Cristina Campano, Virginia Rivero-Buceta, M. Auxiliadora Prieto

Status: Published
Year: 2021
Journal: Microbial Biotechnology
Volume/Issue: 15/1
Publisher: John Wiley & Sons, Ltd
Pages: 149 - 163

Project branding and communication channels set-up and running (logo, promotional materials, website, templates, social media)

Authors: Teodor Metodiev, Gabriela Popova

Status: Published
Year: 2021
Deliverable number: 6.1

Anti-staphylococcal hydrogels based on bacterial cellulose and the antimicrobial biopolyester poly (3-hydroxy-acetylthioalkanoate-co-3-hydroxyalkanoate).

Authors: Virginia Rivero-Buceta, María Rosa Aguilar, Ana María Hernández-Arriaga, Francisco G.Blanco, Antonia Rojas, Marta Tortajada, Rosa Ana Ramírez-Jiménez, Blanca Vázquez-Lasa, Auxiliadora Prieto

Status: Published
Year: 2020
Journal: International Journal of Biological Macromolecules
Volume/Issue: 162
Publisher: Elsevier
Pages: 1869-1879

High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

Authors: Juan Nogales, Joshua Mueller, Steinn Gudmundsson, Francisco J. Canalejo, Estrella Duque, Jonathan Monk, Adam M. Feist, Juan Luis Ramos, Wei Niu, Bernhard O. Palsson

Status: Published
Year: 2020
Journal: Environmental Microbiology
Volume/Issue: 22
Publisher: Society for Applied Microbiology
Pages: 255-269

Preparation and characterization of films based on a natural P(3HB)/mcl-PHA blend obtained through the co-culture of Cupriavidus necator and Pseudomonas citronellolis in apple pulp waste

Authors: Ana Teresa Rebocho, João R. Pereira, Luísa A. Neves, Vítor D. Alves, Chantal Sevrin, Christian Grandfils, Filomena Freitas, Maria A. M. Reis

Status: Published
Year: 2020
Journal: Bioengineering
Volume/Issue: 7/2
Publisher: MDPI
Pages: 34

Current processes and future challenges of photoautotrophic production of acetyl-CoA-derived solar fuels and chemicals in cyanobacteria

Authors: Rui Miao, Hao Xie, Xufeng Liu, Pia Lindberg, Peter Lindblad

Status: Published
Year: 2020
Journal: Current Opinion in Chemical Biology
Volume/Issue: 59
Publisher: Elsevier
Pages: 69-76

In silico prospection of microorganisms to produce polyhydroxyalkanoate from whey: Caulobacter segnis DSM 29236 as a suitable industrial strain

Authors: Daniel Bustamante, Silvia Segarra, Marta Tortajada, Daniel Ramón, Carlos del Cerro, María Auxiliadora Prieto, José Ramón Iglesias, Antonia Rojas

Status: Published
Year: 2019
Journal: Microbial biotechnology
Volume/Issue: 12/3
Publisher: Society for Applied Microbiology
Pages: 487-501

Chemical Composition and Antioxidant Properties of Essential Oils from Peppermint, Native Spearmint and Scotch Spearmint

Authors: Zhaohai Wu, Bie Tan, Yanhong Liu, James Dunn, Patricia Martorell Guerola, Marta Tortajada, Zhijun Cao, Peng Ji

Status: Published
Year: 2019
Journal: Molecules
Volume/Issue: 24/15
Publisher: MDPI

Camelina oil as a promising substrate for mcl-PHA production in Pseudomonas sp. cultures

Authors: Daniel Bustamante, Marta Tortajada, Daniel Ramon, Antonia Rojas

Status: Published
Year: 2019
Journal: Applied food biotechnology
Volume/Issue: 6/1
Publisher: National Nutrition & Food Technology Research Institute
Pages: 61-70

Improved Raoultella planticola Strains for the Production of 2, 3-Butanediol from Glycerol

Authors: Daniel Bustamante, Silvia Segarra, Alejandro Montesinos, Marta Tortajada, Daniel Ramón, Antonia Rojas

Status: Published
Year: 2019
Journal: Fermentation
Volume/Issue: 5(1)/11
Publisher: MDPI

CyanoFactory, a European consortium to develop technologies needed to advance cyanobacteria as chassis for production of chemicals and fuels

Authors: Peter Lindblad, David Fuente, Friederike Borbe, Bernardo Cicchi, Alberto Conejero, Narciso Couto, Helena Čelešnik, Marcello M. Diano, Marko Dolinar, Serena Esposito, Caroline Evans, Eunice A. Ferreira, Joseph Keller, Namita Khanna, Gabriel Kind, Andrew Landels, Lenin Lemus, Josselin Noirel, Sarah Ocklenburg, Paulo Oliveira, Röbbe Wünschiers

Status: Published
Year: 2019
Journal: Algal Research
Volume/Issue: 41
Publisher: Elsevier

Modular Engineering for Photosynthetic 1-Butanol Production in Cyanobacteria

Authors: Xufeng Liu, Rui Miao, Pia Lindberg, Peter Lindblad

Status: Published
Year: 2019
Journal: Energy & Environmental Science
Volume/Issue: 12
Publisher: Royal society of chemistry
Pages: 2765-2777

FLYCOP: metabolic modeling-based analysis and engineering microbial communities

Authors: Beatriz García-Jiménez, José Luis García, Juan Nogales

Status: Published
Year: 2018
Journal: Bioinformatics
Volume/Issue: 34/17
Publisher: OXFORD Academics
Pages: i954-i963

Start-up of a microalgae-based treatment system within the biorefinery concept: from wastewater to bioproducts

Authors: Enrica Uggetti, Joan García, Juan Antonio Álvarez, María Jesús García-Galán

Status: Published
Year: 2018
Journal: Water Science & Technology
Volume/Issue: 78/1
Publisher: IWA Publishing
Pages: 114-124

Generation of a functional, semisynthetic [FeFe]-hydrogenase in a photosynthetic microorganism

Authors: Adam Wegelius, Namita Khanna, Charlène Esmieu, Giovanni Davide Barone, Filipe Pinto, Paula Tamagnini, Gustav Berggren, Peter Lindblad

Status: Published
Year: 2018
Journal: Energy & Environmental Science
Volume/Issue: Issue 11
Publisher: Royal society of chemistry

Engineered cyanobacteria with enhanced growth show increased ethanol production and higher biofuel to biomass ratio

Authors: Feiyan Liang, Elias Englund, Pia Lindberg, Peter Lindblad

Status: Published
Year: 2018
Journal: Metabolic Engineering
Volume/Issue: 46
Publisher: Elsevier
Pages: 51-59

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

Authors: Zishu Liu, Nicolas Cichocki, Fabian Bonk, Susanne Gunther, Florian Schattenberg, Hauke Harms, Florian Centler, Susann Muller

Status: Published
Year: 2018
Journal: mSphere
Volume/Issue: 3/1
Publisher: American society for microbiology

Laboratory-scale simulation and real- time tracking of a microbial contamination event and subsequent shock-chlorination in drinking water

Authors: Michael D. Besmer, Jürg A. Sigrist, Ruben Props, Benjamin Buysschaert, Guannan Mao, Nico Boon, Frederik Hammes

Status: Published
Year: 2017
Journal: Sec. Aquatic Microbiology
Publisher: Frontiers in Microbiology

Constructed wetlands and solar-driven disinfection technologies for sustainable wastewater treatment and reclamation in rural India: SWINGS project

Authors: J. A. Álvarez, C. Ávila, P. Otter, R. Kilian, D. Istenič, M. Rolletschek, P. Molle, N. Khalil, I. Ameršek, V. K. Mishra, C. Jorgensen, A. Garfi, P. Carvalho, H. Brix, C. A. Arias

Status: Published
Year: 2017
Journal: Water Science & Technology
Volume/Issue: 76/6
Publisher: IWA Publishing

The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems

Authors: Michael D. Besmer, David G. Weissbrodt, Bradley E. Kratochvil, Jürg A. Sigrist, Mathias S. Weyland, Frederik Hammes

Status: Published
Year: 2014
Journal: Sec. Systems Microbiology
Publisher: Frontiers in Microbiology

Cell functional enviromics: unravelling the function of environmental factors

Authors: Ana P Teixeira, João ML Dias, Nuno Carinhas, Marcos Sousa, João J Clemente, António E Cunha, Moritz von Stosch, Paula M Alves, Manuel JT Carrondo, Rui Oliveira

Status: Published
Year: 2011
Journal: BMS Systems Biology
Volume/Issue: 5/92
Publisher: Springer

Second generation biofuels and local bio-energy systems

Authors: Blanca Antizar-Ladislao, Juan L. Turrion-Gomez

Status: Published
Year: 2008
Journal: Biofuels, Bioproducts & Biorefining
Publisher: Wiley